PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G08450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26128.6 Da    PI: 9.5592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G08450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-181660145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     kri++   r v fskRr+g++ KA ELS LCda++a+++fs t k
  LPERR05G08450.1 16 KRIDDAAARDVCFSKRRQGLFNKAGELSLLCDANIAIVVFSRTRK 60
                     79***************************************9866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-27867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.278868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-23879IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-181030IPR002100Transcription factor, MADS-box
PfamPF003191.4E-191764IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-183045IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-184566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVKRKPRTGR KKIEIKRIDD AAARDVCFSK RRQGLFNKAG ELSLLCDANI AIVVFSRTRK  60
GFSFGHPSVD DVANRLASMT MGIADNPSVG GGSHDSGEMD RRHWRRRRVE NETLEKEMGG  120
HLIQTVNSEA NLLGLDEVEE LHYKLSVVHA DISARRYQKL QDPKEARLTL PQPQPHMEMT  180
RPSQFLHEEQ TVVPTNAHLP GSNYGLIVEI DASCMLSSVQ GGGGSRGSQN RQFGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638580.16e-77PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0D9WET41e-176A0A0D9WET4_9ORYZ; Uncharacterized protein
STRINGORGLA05G0093200.13e-77(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-21MIKC_MADS family protein